CHEBI:16015
ChEBI
30572
ChemSpider
1.0
17215925
ChemSpider
6022
PubChem-compound
937
ChemSpider
NADH
439153
PubChem-compound
SMILES
O
10-FORMYL-THF
BioCyc
50
ChemSpider
Sideroflexin FSF1
1.0
CHEBI:20506
ChEBI
CHEBI:17115
ChEBI
7444-29-3
CAS
NAD
HMDB0000538
HMDB
1.0
ATP
BioCyc
C00445
KEGG Compound
H4N
Ammonium
18.034374
1.0
1.0
18714427
ChemSpider
51
PubChem-compound
Pyruvic acid
4.1.2.48
false
4.1.2.48
L-Threonine → Acetaldehyde + Glycine
LEFT_TO_RIGHT
CHEBI:15846
ChEBI
2.6.1.44
false
2.6.1.44
Glyoxylic acid + L-Alanine → Glycine + Pyruvic acid
LEFT_TO_RIGHT
ADP
BioCyc
C3H4O3
Pyruvic acid
88.016045
6288
PubChem-compound
53-59-8
CAS
1.0
TransportCatalysis1586
ACTIVATION
C3H8NO6P
DL-O-Phosphoserine
185.00893
THR
BioCyc
5742
ChemSpider
1038
PubChem-compound
17885-08-4
CAS
CHEBI:16474
ChEBI
GO:0005829
GENE ONTOLOGY
278
ChemSpider
C19H23N7O6
Tetrahydrofolic acid
445.171
439175
PubChem-compound
C5H6O5
Oxoglutaric acid
146.02153
CHEBI:16908
ChEBI
5736
ChemSpider
C3H5O7P
Phosphohydroxypyruvic acid
183.9773
5735
ChemSpider
O4P
Phosphate
94.95342
METHYLENE-THF
BioCyc
704
ChemSpider
NADPH
1010
ChemSpider
SER
BioCyc
C00101
KEGG Compound
Saccharomyces cerevisiae
HMDB0001533
HMDB
1.0
NADP
C21H30N7O17P3
NADPH
745.0911
C21H29N7O17P3
NADP
744.08325
Mitochondrion
D-3-phosphoglycerate dehydrogenase 1
THF
BioCyc
D-3-phosphoglycerate dehydrogenase 2
1.0
GLY
BioCyc
NADPH
BioCyc
Ammonium
3913-50-6
CAS
Hydrogen Ion
CHEBI:16857
ChEBI
CHEBI:16977
ChEBI
HMDB0000208
HMDB
10-Formyltetrahydrofolate
Cytosol
218
ChemSpider
C00597
KEGG Compound
C00234
KEGG Compound
Adenosine triphosphate
58-68-4
CAS
SMILES
NC1=NC(=O)C2=C(NC[C@H](CNC3=CC=C(C=C3)C(=O)NC(CCC(O)=O)C(O)=O)N2)N1
L-Glutamic acid
72-19-5
CAS
SMILES
[O-]P([O-])([O-])=O
C20H21N7O6
5,10-Methenyltetrahydrofolic acid
455.15533
1.0
SMILES
OC(=O)CCC(=O)C(O)=O
HMDB0000217
HMDB
122347
PubChem-compound
CHEBI:30915
ChEBI
CHEBI:15637
ChEBI
C2H5NO2
Glycine
75.03203
1.0
Formic acid
C2H2O3
Glyoxylic acid
74.0004
C00009
KEGG Compound
Serine hydroxymethyltransferase, mitochondrial
Aminomethyltransferase, mitochondrial
C00008
KEGG Compound
mitochondrial C1-tetrahydrofolate synthase
C00006
KEGG Compound
Threonine aldolase
PW002398
PathWhiz
Phosphoserine aminotransferase
phosphoserine phosphatase
CHEBI:18009
ChEBI
Serine hydroxymethyltransferase
3-Phosphoglyceric acid
C00001
KEGG Compound
HMDB0001429
HMDB
L-ALPHA-ALANINE
BioCyc
SMILES
OC(=O)C(=O)COP(O)(O)=O
56-41-7
CAS
C00005
KEGG Compound
C00004
KEGG Compound
CHEBI:18367
ChEBI
C00003
KEGG Compound
1032
ChemSpider
135-16-0
CAS
388320
ChemSpider
C00002
KEGG Compound
1031
ChemSpider
SMILES
NC(=O)C1=C[N+](=CC=C1)[C@@H]1O[C@H](CO[P@](O)(=O)O[P@](O)(=O)OC[C@H]2O[C@H]([C@H](OP(O)(O)=O)[C@@H]2O)N2C=NC3=C(N)N=CN=C23)[C@@H](O)[C@H]1O
HMDB0000221
HMDB
5,10-Methylene-THF
5257127
PubChem-compound
6051
ChemSpider
Sideroflexin FSF1
C20H23N7O6
5,10-Methylene-THF
457.171
SMILES
NC(=O)C1=CN(C=CC1)[C@H]1O[C@@H](COP(O)(=O)OP(O)(=O)OC[C@@H]2O[C@@H]([C@@H](OP(O)(O)=O)[C@H]2O)N2C=NC3=C(N)N=CN=C23)[C@H](O)[C@@H]1O
GLT
BioCyc
ReactionCatalysis6300
ACTIVATION
Alanine--glyoxylate aminotransferase 1
1.0
53-57-6
CAS
105
PubChem-compound
C21H28N7O14P2
NAD
664.11694
106
PubChem-compound
SubPathwayInteraction111228
SubPathway111228Reaction
SubPathwayReaction
C01342
KEGG Compound
1.0
CHEBI:28938
ChEBI
SMILES
C[C@H](N)C(O)=O
HMDB0000902
HMDB
5950
PubChem-compound
5951
PubChem-compound
SMILES
C[C@@H](O)[C@H](N)C(O)=O
Glyoxylic acid
5,10-Methenyltetrahydrofolic acid
P37291
UniProt
P37292
UniProt
C21H29N7O14P2
NADH
665.12476
NAD(P)
BioCyc
Glycine
5957
PubChem-compound
H
Hydrogen Ion
1.007825
CHEBI:15636
ChEBI
C00143
KEGG Compound
HMDB0000119
HMDB
C00022
KEGG Compound
56-65-5
CAS
53-84-9
CAS
3-P-HYDROXYPYRUVATE
BioCyc
C00026
KEGG Compound
1.0
C00025
KEGG Compound
HMDB0000123
HMDB
104
ChemSpider
SMILES
N[C@@H](CO)C(O)=O
Adenosine diphosphate
HMDB0000243
HMDB
103
ChemSpider
3432-99-3
CAS
GO:0005739
GENE ONTOLOGY
SMILES
NC(COP(O)(O)=O)C(O)=O
C10H15N5O10P2
Adenosine diphosphate
427.02942
298-12-4
CAS
1.0
Glycine Metabolism
ReactionCatalysis6293
ACTIVATION
ReactionCatalysis6292
ACTIVATION
ReactionCatalysis6291
ACTIVATION
ReactionCatalysis6290
ACTIVATION
1.0
1.0
ReactionCatalysis6297
ACTIVATION
ReactionCatalysis6296
ACTIVATION
ReactionCatalysis6295
ACTIVATION
ReactionCatalysis6294
ACTIVATION
P09440
UniProt
1.0
SMILES
NC(=O)C1=C[N+](=CC=C1)[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N2C=NC3=C2N=CN=C3N)[C@@H](O)[C@H]1O
CPD-8587
BioCyc
P48015
UniProt
760
PubChem-compound
CHEBI:16891
ChEBI
C01005
KEGG Compound
C00037
KEGG Compound
HMDB0000807
HMDB
5682
ChemSpider
SMILES
NC(=O)C1=CN(C=CC1)[C@@H]1O[C@H](CO[P@](O)(=O)O[P@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N2C=NC3=C(N)N=CN=C23)[C@@H](O)[C@H]1O
328-50-7
CAS
Water
Alanine--glyoxylate aminotransferase 1
C00041
KEGG Compound
Threonine aldolase
Serine hydroxymethyltransferase, mitochondrial
Serine hydroxymethyltransferase
mitochondrial C1-tetrahydrofolate synthase
ReactionCatalysis6299
ACTIVATION
Aminomethyltransferase, mitochondrial
ReactionCatalysis6298
ACTIVATION
phosphoserine phosphatase
Phosphoserine aminotransferase
HMDB0001341
HMDB
644350
PubChem-compound
5675
ChemSpider
C00048
KEGG Compound
SMILES
NC1=NC=NC2=C1N=CN2[C@@H]1O[C@H](COP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O
HMDB0001354
HMDB
HMDB0000148
HMDB
14798-03-9
CAS
Transport528
false
L-Serine (→) Transport: Saccharomyces cerevisiae, Cytosol to Saccharomyces cerevisiae, Cell, Mitochondrion
LEFT_TO_RIGHT
18971002
PubChem-compound
HMDB0000142
HMDB
1.0
CHEBI:15422
ChEBI
D-3-phosphoglycerate dehydrogenase 1
C3H7O7P
3-Phosphoglyceric acid
185.99294
D-3-phosphoglycerate dehydrogenase 2
388299
ChemSpider
7732-18-5
CAS
1.0
C00058
KEGG Compound
HMDB0001487
HMDB
GLYOX
BioCyc
CH2O2
Formic acid
46.005478
127-17-3
CAS
CHEBI:30933
ChEBI
Endocytosis
SubPathway
P40510
UniProt
56-86-0
CAS
P33330
UniProt
FORMATE
BioCyc
SMP0002320
SMPDB
C5H9NO4
L-Glutamic acid
147.05316
33032
PubChem-compound
L-Serine
SMILES
[NH4+]
C10H16N5O13P3
Adenosine triphosphate
506.99576
C20H23N7O7
10-Formyltetrahydrofolate
473.1659
1.0
C00188
KEGG Compound
56-40-6
CAS
C00065
KEGG Compound
1.0
Acetaldehyde
1.0
2800-34-2
CAS
CHEBI:16761
ChEBI
1.0
HMDB0000167
HMDB
SMILES
CC(=O)C(O)=O
1.0
P42941
UniProt
CHEBI:17050
ChEBI
C2H4O
Acetaldehyde
44.026215
CHEBI:15428
ChEBI
HMDB0000161
HMDB
962
PubChem-compound
C4H9NO3
L-Threonine
119.05824
724
PubChem-compound
C3H7NO2
L-Alanine
89.047676
2-KETOGLUTARATE
BioCyc
5800
ChemSpider
CHEBI:37712
ChEBI
SMILES
OC(COP(O)(O)=O)C(O)=O
Phosphate
5893
PubChem-compound
1.0
Phosphohydroxypyruvic acid
P40054
UniProt
C00080
KEGG Compound
HMDB0001024
HMDB
Tetrahydrofolic acid
730
ChemSpider
HMDB0000972
HMDB
CHEBI:30751
ChEBI
Oxoglutaric acid
SMILES
NC1=NC(=O)C2=C(NCC(CN(C=O)C3=CC=C(C=C3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)N2)N1
1.0
3-phosphoglycerate dehydrogenase
C00084
KEGG Compound
75-07-0
CAS
P43567
UniProt
172
ChemSpider
SMILES
N[C@@H](CCC(O)=O)C(O)=O
HMDB0002111
HMDB
CHEBI:32816
ChEBI
L-Serine
SMILES
OC=O
Q12029
UniProt
CHEBI:15377
ChEBI
CHEBI:15378
ChEBI
SMILES
[H+]
14265-44-2
CAS
5,10-methenyl-thf
BioCyc
PYRUVATE
BioCyc
P37303
UniProt
ACETALD
BioCyc
58-64-0
CAS
56-45-1
CAS
SMILES
NC1=NC=NC2=C1N=CN2[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O
5886
PubChem-compound
C03232
KEGG Compound
DL-O-Phosphoserine
1.0
G3P
BioCyc
1.0
SMILES
CC=O
L-Serine
1.0
C3H7NO3
L-Serine
105.042595
HMDB0000187
HMDB
CHEBI:15343
ChEBI
4932
TAXONOMY
1.5.1.5,3.5.4.9, 6.3.4.3
false
1.5.1.5,3.5.4.9, 6.3.4.3
5,10-Methylene-THF + NADP → 5,10-Methenyltetrahydrofolic acid + NADPH
LEFT_TO_RIGHT
Reaction6371
false
5,10-Methenyltetrahydrofolic acid + Water → 10-Formyltetrahydrofolate + Hydrogen Ion
LEFT_TO_RIGHT
16741146
PubChem-compound
Reaction6372
false
10-Formyltetrahydrofolate + Adenosine diphosphate + Phosphate → Adenosine triphosphate + Formic acid + Tetrahydrofolic acid
LEFT_TO_RIGHT
64-18-6
CAS
SMILES
[H][C@@]12CN(C=[N+]1C1=C(NC2)NC(N)=NC1=O)C1=CC=C(C=C1)C(=O)N[C@@H](CCC(O)=O)C([O-])=O
22833512
PubChem-compound
SMILES
OC(=O)C=O
HMDB0001721
HMDB
H2O
Water
18.010565
SMILES
NCC(O)=O
1.1.1.95
false
1.1.1.95
3-Phosphoglyceric acid + NAD → Hydrogen Ion + NADH + Phosphohydroxypyruvic acid
LEFT_TO_RIGHT
2.6.1.52
false
2.6.1.52
L-Glutamic acid + Phosphohydroxypyruvic acid → DL-O-Phosphoserine + Oxoglutaric acid
LEFT_TO_RIGHT
NADH
BioCyc
3.1.3.3
false
3.1.3.3
DL-O-Phosphoserine + Water → L-Serine + Phosphate
LEFT_TO_RIGHT
2.1.2.1
false
2.1.2.1
L-Serine + Tetrahydrofolic acid → 5,10-Methylene-THF + Glycine + Water
LEFT_TO_RIGHT
2.1.2.1
false
2.1.2.1
L-Serine + Tetrahydrofolic acid → 5,10-Methylene-THF + Glycine + Water
LEFT_TO_RIGHT
HMDB0000990
HMDB
NAD
BioCyc
2.1.2.10
false
2.1.2.10
Glycine + Tetrahydrofolic acid → 5,10-Methylene-THF + Ammonium
LEFT_TO_RIGHT
1060
PubChem-compound
1061
PubChem-compound
HMDB0059597
HMDB
HMDB0041827
HMDB
109092
ChemSpider
559356
ChemSpider
L-Alanine
HMDB0001846
HMDB
L-Threonine
177
PubChem-compound
3-P-SERINE
BioCyc
740
ChemSpider
SMILES
[H][C@@]12CN(CN1C1=C(NC2)N=C(N)NC1=O)C1=CC=C(C=C1)C(=O)NC(CCC(O)=O)C(O)=O
13781857
PubChem-compound
820-11-1
CAS