Quantitative metabolomics services for biomarker discovery and validation.
Specializing in ready to use metabolomics kits.
Your source for quantitative metabolomics technologies and bioinformatics.
You are using an unsupported browser. Please upgrade your browser to a newer version to get the best experience on PathBank.
Loading Pathway...
PW000981 PathWhiz C5H11O7P 1-Deoxy-D-xylulose 5-phosphate 214.02425 17215925 ChemSpider 6022 PubChem-compound HMDB01347 HMDB 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol 937 ChemSpider Isopentenyl-diphosphate Delta-isomerase CHEBI:16493 ChEBI 2-C-Methyl-D-erythritol-2,4-cyclodiphosphate HMDB00250 HMDB 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HMDB01341 HMDB Cytidine triphosphate SMILES O CHEBI:57919 ChEBI 2.0 Pyrophosphate 1.0 HMDB01112 HMDB C00448 KEGG Compound 6131 PubChem-compound P0AD57 UniProt 1.0 1.0 ATP BioCyc 1.0 393270 ChemSpider 559142 ChemSpider 5.0 ADP BioCyc P22939 UniProt Secondary metabolites: methylerythritol phosphate and polyisoprenoid biosynthesis 53-59-8 CAS 1.0 358-72-5 CAS 1-deoxyxylulose-5-phosphate synthase 1.0 5742 ChemSpider 1038 PubChem-compound 4444251 ChemSpider CHEBI:16474 ChEBI 2.5.1.10 false 2.5.1.10 Dimethylallylpyrophosphate + Isopentenyl pyrophosphate → Geranyl-PP + Pyrophosphate LEFT_TO_RIGHT 5.3.3.2 false 5.3.3.2 Isopentenyl pyrophosphate ↔ Dimethylallylpyrophosphate REVERSIBLE Reaction3694 false 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate + Hydrogen Ion + NADPH → Dimethylallylpyrophosphate + NADP + Water LEFT_TO_RIGHT 1.17.1.2 false 1.17.1.2 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate + Hydrogen Ion + NADPH → Isopentenyl pyrophosphate + NADPH + Water LEFT_TO_RIGHT 1.17.7.1 false 1.17.7.1 2-C-Methyl-D-erythritol-2,4-cyclodiphosphate + a reduced flavodoxin → 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate + Hydrogen Ion + Water + an oxidized flavodoxin LEFT_TO_RIGHT HMDB59597 HMDB 4.6.1.12 false 4.6.1.12 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol → 2-C-Methyl-D-erythritol-2,4-cyclodiphosphate + Cytidine monophosphate LEFT_TO_RIGHT 2.7.1.148 false 2.7.1.148 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + Adenosine triphosphate → 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + Adenosine diphosphate + Hydrogen Ion LEFT_TO_RIGHT 274 ChemSpider 2.5.1.90 false 2.5.1.90 Farnesyl pyrophosphate + 5 Isopentenyl pyrophosphate → Octaprenyl diphosphate + 5 Pyrophosphate LEFT_TO_RIGHT PW000959 PathWhiz PW000958 PathWhiz 2.5.1.31 false 2.5.1.31 Farnesyl pyrophosphate + 8 Isopentenyl pyrophosphate → 8 Pyrophosphate + di-trans,octa-cis-undecaprenyl diphosphate LEFT_TO_RIGHT Reaction3697 false Geranyl-PP + Isopentenyl pyrophosphate → Farnesyl pyrophosphate + Pyrophosphate LEFT_TO_RIGHT 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate HMDB01213 HMDB SMP00974 SMPDB CHEBI:58483 ChEBI 709 ChemSpider SMP00975 SMPDB C00341 KEGG Compound C14H23N3O14P2 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol 519.06665 NADPH C5H10O9P2 2-C-Methyl-D-erythritol-2,4-cyclodiphosphate 275.98 CHEBI:17211 ChEBI C04146 KEGG Compound 1-Deoxy-D-xylulose 5-phosphate C14H22N3O17P3 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol 597.0184 445713 PubChem-compound 1010 ChemSpider CHEBI:57823 ChEBI NADP PPI BioCyc C21H30N7O17P3 NADPH 745.0911 C21H29N7O17P3 NADP 744.08325 2.7.7.60 false 2.7.7.60 2-C-methyl-D-erythritol 4-phosphate + Cytidine triphosphate + Hydrogen Ion → 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + Pyrophosphate LEFT_TO_RIGHT 1.1.1.267 false 1.1.1.267 1-Deoxy-D-xylulose 5-phosphate + Hydrogen Ion + NADPH → 2-C-methyl-D-erythritol 4-phosphate + NADP LEFT_TO_RIGHT 63-37-6 CAS Reaction3687 false D-Glyceraldehyde 3-phosphate + Hydrogen Ion → 1-Deoxy-D-xylulose 5-phosphate + Carbon dioxide LEFT_TO_RIGHT C3H7O6P D-Glyceraldehyde 3-phosphate 169.99803 2.0 1.0 NADPH BioCyc Hydrogen Ion 8.0 PW000785 PathWhiz HMDB00217 HMDB SMILES [H][C@@](O)(COP(O)(O)=O)[C@@](C)(O)CO C5H12O7P2 Isopentenyl pyrophosphate 246.00583 8.0 C00235 KEGG Compound CHEBI:16057 ChEBI Adenosine triphosphate 1.0 C10H20O7P2 Geranyl-PP 314.06842 124-38-9 CAS 2.0 HMDB00221 HMDB 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase C00008 KEGG Compound C00129 KEGG Compound 1158 ChemSpider C00006 KEGG Compound Isopentenyl-diphosphate Delta-isomerase CHEBI:18009 ChEBI C5H12O7P2 Dimethylallylpyrophosphate 246.00583 C00001 KEGG Compound CTP BioCyc CHEBI:18361 ChEBI C00005 KEGG Compound an oxidized flavodoxin SMILES CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/COP(O)(=O)OP(O)(O)=O Farnesyl pyrophosphate C00002 KEGG Compound a reduced flavodoxin SMILES NC(=O)C1=C[N+](=CC=C1)[C@@H]1O[C@H](CO[P@](O)(=O)O[P@](O)(=O)OC[C@H]2O[C@H]([C@H](OP(O)(O)=O)[C@@H]2O)N2C=NC3=C(N)N=CN=C23)[C@@H](O)[C@H]1O SMILES NC(=O)C1=CN(C=CC1)[C@H]1O[C@@H](COP(O)(=O)OP(O)(=O)OC[C@@H]2O[C@@H]([C@@H](OP(O)(O)=O)[C@H]2O)N2C=NC3=C(N)N=CN=C23)[C@H](O)[C@@H]1O 3.0 1.0 1.0 393471 ChemSpider 53-57-6 CAS an oxidized flavodoxin a reduced flavodoxin SMP00924 SMPDB 2.0 763-10-0 CAS CHEBI:17361 ChEBI C00011 KEGG Compound SMILES O=C=O Dimethylallylpyrophosphate peptidoglycan biosynthesis I SubPathway 443201 PubChem-compound Geranyl-PP CHEBI:16275 ChEBI glycolysis and pyruvate dehydrogenase SubPathway SMP00807 SMPDB C00013 KEGG Compound O7P2 Pyrophosphate 173.91193 NAD(P) BioCyc Q46893 UniProt 1-deoxy-D-xylulose 5-phosphate reductoisomerase P45568 UniProt 5957 PubChem-compound CHEBI:128753 ChEBI C9H16N3O14P3 Cytidine triphosphate 482.9845 CHEBI:17138 ChEBI H Hydrogen Ion 1.007825 Secondary Metabolites: enterobacterial common antigen biosynthesis SubPathway D-Glyceraldehyde 3-phosphate HMDB01094 HMDB SubPathwayInteraction1675 SubPathway1675Reaction SubPathwayReaction 445995 PubChem-compound 56-65-5 CAS SubPathwayInteraction1676 SubPathway1676Reaction SubPathwayReaction Isopentenyl pyrophosphate Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) Cytidine monophosphate SubPathwayInteraction2097 SubPathwayReaction SubPathway2097Reaction DEOXYXYLULOSE-5P BioCyc Adenosine diphosphate C10H15N5O10P2 Adenosine diphosphate 427.02942 Octaprenyl diphosphate C40H68O7P2 Octaprenyl diphosphate 722.44403 1.0 Octaprenyl-diphosphate synthase C9H14N3O8P Cytidine monophosphate 323.05185 1.0 SubPathwayInteraction1726 SubPathway1726Reaction SubPathwayReaction 647 PubChem-compound 372-97-4 CAS HMDB00095 HMDB 2.0 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4-diphosphocytidyl-2C-methyl-D-erythritol synthase Water 4-diphosphocytidyl-2-C-methylerythritol kinase SMILES NC1=NC(=O)N(C=C1)[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O Geranyltranstransferase octaprenyl diphosphate synthase undecaprenyl diphosphate synthase SMILES [O-]P([O-])(=O)OP([O-])([O-])=O 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase 14000-31-8 CAS GERANYL-PP BioCyc SMILES [H][C@@]1(O)COP([O-])(=O)OP([O-])(=O)O[C@@]1(C)CO 5675 ChemSpider SMILES [H][C@@](O)(COP(O)(=O)OP([O-])(=O)OC[C@@]1([H])O[C@@]([H])(N2C=CC(=N)N=C2[O-])[C@]([H])(O)[C@]1([H])O)[C@@](C)(O)CO SMILES [H][C@@](O)(COP(O)(=O)OP([O-])(=O)OC[C@@]1([H])O[C@@]([H])(N2C=CC(=N)N=C2[O-])[C@]([H])(O)[C@]1([H])O)[C@](C)(CO)OP([O-])([O-])=O SMILES NC1=NC=NC2=C1N=CN2[C@@H]1O[C@H](COP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O SMILES NC1=NC(=O)N(C=C1)[C@@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]1O 1.0 SMILES CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\COP(O)(=O)OP(O)(O)=O HMDB00538 HMDB P77488 UniProt 1-deoxy-D-xylulose-5-phosphate synthase 5901 ChemSpider C15H28O7P2 Farnesyl pyrophosphate 382.131 CHEBI:15422 ChEBI 1.0 5.0 SMILES [H]\C(COP([O-])(=O)OP([O-])([O-])=O)=C(\C)CO C00055 KEGG Compound 1.0 7732-18-5 CAS HMDB01285 HMDB P60472 UniProt 591-59-3 CAS SMILES CC(=O)[C@@H](O)[C@H](O)COP(O)(O)=O 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1.0 C00063 KEGG Compound 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1.0 CPD-4211 BioCyc C10H16N5O13P3 Adenosine triphosphate 506.99576 CHEBI:16526 ChEBI HMDB00082 HMDB 1-deoxy-D-xylulose 5-phosphate reductoisomerase FARNESYL-PP BioCyc CHEBI:16761 ChEBI 65-47-4 CAS 5280651 PubChem-compound 1.0 Octaprenyl-diphosphate synthase HMDB01967 HMDB 391473 ChemSpider 962 PubChem-compound C5H9O8P2 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate 258.97726 358-71-4 CAS 5800 ChemSpider CO2 Carbon dioxide 43.98983 1.0 di-trans,octa-cis-undecaprenyl diphosphate HMDB02111 HMDB SMILES CC(C)=CCC\C(C)=C\CC\C(C)=C\COP(O)(=O)OP(O)(O)=O ReactionCatalysis3668 ACTIVATION CMP BioCyc C00080 KEGG Compound ReactionCatalysis3669 ACTIVATION ReactionCatalysis3666 ACTIVATION ReactionCatalysis3667 ACTIVATION 729 PubChem-compound ReactionCatalysis3664 ACTIVATION ReactionCatalysis3665 ACTIVATION CHEBI:17677 ChEBI CHEBI:15377 ChEBI CHEBI:15378 ChEBI SMILES [H+] 6176 PubChem-compound SMP00997 SMPDB 58-64-0 CAS SMILES NC1=NC=NC2=C1N=CN2[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O 5886 PubChem-compound 2-C-methyl-D-erythritol 4-phosphate Q46822 UniProt Geranyltranstransferase CHEBI:16584 ChEBI 1-deoxy-D-xylulose-5-phosphate synthase 1.0 190079-18-6 CAS 280 PubChem-compound ReactionCatalysis3671 ACTIVATION ReactionCatalysis3672 ACTIVATION ReactionCatalysis3670 ACTIVATION ReactionCatalysis3675 ACTIVATION ReactionCatalysis3676 ACTIVATION ReactionCatalysis3673 ACTIVATION 1.0 ReactionCatalysis3674 ACTIVATION P62617 UniProt 1.0 P62615 UniProt 644102 PubChem-compound 1195 PubChem-compound 5941 ChemSpider CHEBI:17407 ChEBI Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) SMILES CC(=C)CCO[P@](O)(=O)OP(O)(O)=O C5H13O7P 2-C-methyl-D-erythritol 4-phosphate 216.03989 HMDB01120 HMDB SMILES OC(COP(O)(O)=O)C=O 22833512 PubChem-compound H2O Water 18.010565 SMILES CC(C)=CCC\C(C)=C\CO[P@@](=O)(O)OP(=O)(O)O 1.0 1.0 1.0 GAP BioCyc HMDB00961 HMDB 2.0 P62623 UniProt C00661 KEGG Compound Carbon dioxide P62620 UniProt C55H92O7P2 di-trans,octa-cis-undecaprenyl diphosphate 926.63184 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 627 ChemSpider SMILES CC(C)=CCO[P@](O)(=O)OP(O)(O)=O 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase C11437 KEGG Compound PW000906 PathWhiz Secondary Metabolites: Ubiquinol biosynthesis SubPathway 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2.0 OCTAPRENYL-DIPHOSPHATE BioCyc 1-deoxy-D- xylulose-5- phosphate synthase 1-deoxy-D- xylulose 5-phosphate reductoisomerase 2-C-methyl-D- erythritol 4-phosphate cytidylyltransferase 4- diphosphocytidyl- 2-C-methyl-D- erythritol kinase 2-C-methyl-D- erythritol 2,4- cyclodiphosphate synthase 4-hydroxy-3- methylbut-2- en-1-yl diphosphate synthase 4-hydroxy-3- methylbut-2- enyl diphosphate reductase 4-hydroxy-3- methylbut-2- enyl diphosphate reductase Isopentenyl- diphosphate Delta-isomerase Geranyltranstransferase Geranyltranstransferase Ditrans,polycis- undecaprenyl- diphosphate synthase ((2E,6E)- farnesyl- diphosphate specific) Octaprenyl- diphosphate synthase D- Glyceraldehyde 3-phosphate H + CO 2 1-Deoxy-D- xylulose 5-phosphate NADPH H + NADP 2-C-methyl-D- erythritol 4-phosphate Cytidine triphosphate H + PP i 4-(cytidine 5'- diphospho)-2- C-methyl-D- erythritol ATP ADP H + 2-phospho-4- (cytidine 5'- diphospho)-2- C-methyl-D- erythritol Cytidine monophosphate 2-C-Methyl-D- erythritol- 2,4- cyclodiphosphate H 2 O H + 1-hydroxy-2- methyl-2-(E)- butenyl 4-diphosphate H + NADPH H 2 O NADPH Isopentenyl pyrophosphate H + NADPH NADP H 2 O Dimethylallylpyrophosphate Dimethylallylpyrophosphate Isopentenyl pyrophosphate PP i Geranyl-PP Isopentenyl pyrophosphate PP i Farnesyl pyrophosphate Isopentenyl pyrophosphate PP i di- trans,octa- cis- undecaprenyl diphosphate Isopentenyl pyrophosphate PP i Octaprenyl diphosphate Manganese NADPH Magnesium Magnesium Manganese 4Fe-4S Manganese Cobalt FAD NADH NADPH Cobalt FAD NADPH Magnesium Zinc (II) ion Magnesium Magnesium Magnesium Magnesium a reduced flavodoxin an oxidized flavodoxin glycolysis and pyruvate dehydrogenase peptidoglycan biosynthesis I Secondary Metabolites: Ubiquinol biosynthesis Secondary Metabolites: Ubiquinol biosynthesis Secondary Metabolites: enterobacterial common antigen biosynthesis NADH
PW000981 PathWhiz C5H11O7P 1-Deoxy-D-xylulose 5-phosphate 214.02425 17215925 ChemSpider 6022 PubChem-compound HMDB01347 HMDB 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol 937 ChemSpider Isopentenyl-diphosphate Delta-isomerase CHEBI:16493 ChEBI 2-C-Methyl-D-erythritol-2,4-cyclodiphosphate HMDB00250 HMDB 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HMDB01341 HMDB Cytidine triphosphate SMILES O CHEBI:57919 ChEBI 2.0 Pyrophosphate 1.0 HMDB01112 HMDB C00448 KEGG Compound 6131 PubChem-compound P0AD57 UniProt 1.0 1.0 ATP BioCyc 1.0 393270 ChemSpider 559142 ChemSpider 5.0 ADP BioCyc P22939 UniProt Secondary metabolites: methylerythritol phosphate and polyisoprenoid biosynthesis 53-59-8 CAS 1.0 358-72-5 CAS 1-deoxyxylulose-5-phosphate synthase 1.0 5742 ChemSpider 1038 PubChem-compound 4444251 ChemSpider CHEBI:16474 ChEBI 2.5.1.10 false 2.5.1.10 Dimethylallylpyrophosphate + Isopentenyl pyrophosphate → Geranyl-PP + Pyrophosphate LEFT_TO_RIGHT 5.3.3.2 false 5.3.3.2 Isopentenyl pyrophosphate ↔ Dimethylallylpyrophosphate REVERSIBLE Reaction3694 false 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate + Hydrogen Ion + NADPH → Dimethylallylpyrophosphate + NADP + Water LEFT_TO_RIGHT 1.17.1.2 false 1.17.1.2 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate + Hydrogen Ion + NADPH → Isopentenyl pyrophosphate + NADPH + Water LEFT_TO_RIGHT 1.17.7.1 false 1.17.7.1 2-C-Methyl-D-erythritol-2,4-cyclodiphosphate + a reduced flavodoxin → 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate + Hydrogen Ion + Water + an oxidized flavodoxin LEFT_TO_RIGHT HMDB59597 HMDB 4.6.1.12 false 4.6.1.12 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol → 2-C-Methyl-D-erythritol-2,4-cyclodiphosphate + Cytidine monophosphate LEFT_TO_RIGHT 2.7.1.148 false 2.7.1.148 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + Adenosine triphosphate → 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + Adenosine diphosphate + Hydrogen Ion LEFT_TO_RIGHT 274 ChemSpider 2.5.1.90 false 2.5.1.90 Farnesyl pyrophosphate + 5 Isopentenyl pyrophosphate → Octaprenyl diphosphate + 5 Pyrophosphate LEFT_TO_RIGHT PW000959 PathWhiz PW000958 PathWhiz 2.5.1.31 false 2.5.1.31 Farnesyl pyrophosphate + 8 Isopentenyl pyrophosphate → 8 Pyrophosphate + di-trans,octa-cis-undecaprenyl diphosphate LEFT_TO_RIGHT Reaction3697 false Geranyl-PP + Isopentenyl pyrophosphate → Farnesyl pyrophosphate + Pyrophosphate LEFT_TO_RIGHT 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate HMDB01213 HMDB http://identifiers.org/smpdb/SMP00974 SMPDB CHEBI:58483 ChEBI 709 ChemSpider http://identifiers.org/smpdb/SMP00975 SMPDB C00341 KEGG Compound C14H23N3O14P2 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol 519.06665 NADPH C5H10O9P2 2-C-Methyl-D-erythritol-2,4-cyclodiphosphate 275.98 CHEBI:17211 ChEBI C04146 KEGG Compound 1-Deoxy-D-xylulose 5-phosphate C14H22N3O17P3 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol 597.0184 445713 PubChem-compound 1010 ChemSpider CHEBI:57823 ChEBI NADP PPI BioCyc C21H30N7O17P3 NADPH 745.0911 C21H29N7O17P3 NADP 744.08325 2.7.7.60 false 2.7.7.60 2-C-methyl-D-erythritol 4-phosphate + Cytidine triphosphate + Hydrogen Ion → 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + Pyrophosphate LEFT_TO_RIGHT glycolysis and pyruvate dehydrogenase SubPathway 1.1.1.267 false 1.1.1.267 1-Deoxy-D-xylulose 5-phosphate + Hydrogen Ion + NADPH → 2-C-methyl-D-erythritol 4-phosphate + NADP LEFT_TO_RIGHT 63-37-6 CAS Reaction3687 false D-Glyceraldehyde 3-phosphate + Hydrogen Ion → 1-Deoxy-D-xylulose 5-phosphate + Carbon dioxide LEFT_TO_RIGHT C3H7O6P D-Glyceraldehyde 3-phosphate 169.99803 2.0 1.0 NADPH BioCyc Secondary Metabolites: enterobacterial common antigen biosynthesis SubPathway Hydrogen Ion 8.0 PW000785 PathWhiz HMDB00217 HMDB SMILES [H][C@@](O)(COP(O)(O)=O)[C@@](C)(O)CO C5H12O7P2 Isopentenyl pyrophosphate 246.00583 8.0 C00235 KEGG Compound CHEBI:16057 ChEBI Adenosine triphosphate 1.0 C10H20O7P2 Geranyl-PP 314.06842 124-38-9 CAS 2.0 HMDB00221 HMDB 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase C00008 KEGG Compound C00129 KEGG Compound 1158 ChemSpider C00006 KEGG Compound Isopentenyl-diphosphate Delta-isomerase CHEBI:18009 ChEBI C5H12O7P2 Dimethylallylpyrophosphate 246.00583 C00001 KEGG Compound CTP BioCyc CHEBI:18361 ChEBI C00005 KEGG Compound an oxidized flavodoxin SMILES CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/COP(O)(=O)OP(O)(O)=O Farnesyl pyrophosphate C00002 KEGG Compound a reduced flavodoxin SMILES NC(=O)C1=C[N+](=CC=C1)[C@@H]1O[C@H](CO[P@](O)(=O)O[P@](O)(=O)OC[C@H]2O[C@H]([C@H](OP(O)(O)=O)[C@@H]2O)N2C=NC3=C(N)N=CN=C23)[C@@H](O)[C@H]1O SMILES NC(=O)C1=CN(C=CC1)[C@H]1O[C@@H](COP(O)(=O)OP(O)(=O)OC[C@@H]2O[C@@H]([C@@H](OP(O)(O)=O)[C@H]2O)N2C=NC3=C(N)N=CN=C23)[C@H](O)[C@@H]1O 3.0 1.0 1.0 393471 ChemSpider 53-57-6 CAS an oxidized flavodoxin a reduced flavodoxin http://identifiers.org/smpdb/SMP00924 SMPDB 2.0 763-10-0 CAS CHEBI:17361 ChEBI C00011 KEGG Compound SMILES O=C=O Dimethylallylpyrophosphate 443201 PubChem-compound Geranyl-PP CHEBI:16275 ChEBI http://identifiers.org/smpdb/SMP00807 SMPDB C00013 KEGG Compound O7P2 Pyrophosphate 173.91193 NAD(P) BioCyc Q46893 UniProt 1-deoxy-D-xylulose 5-phosphate reductoisomerase P45568 UniProt 5957 PubChem-compound CHEBI:128753 ChEBI C9H16N3O14P3 Cytidine triphosphate 482.9845 CHEBI:17138 ChEBI H Hydrogen Ion 1.007825 D-Glyceraldehyde 3-phosphate HMDB01094 HMDB SubPathwayInteraction1675 SubPathway1675Reaction SubPathwayReaction 445995 PubChem-compound 56-65-5 CAS SubPathwayInteraction1676 SubPathway1676Reaction SubPathwayReaction Isopentenyl pyrophosphate Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) Cytidine monophosphate SubPathwayInteraction2097 SubPathwayReaction SubPathway2097Reaction DEOXYXYLULOSE-5P BioCyc Adenosine diphosphate C10H15N5O10P2 Adenosine diphosphate 427.02942 Octaprenyl diphosphate C40H68O7P2 Octaprenyl diphosphate 722.44403 Secondary Metabolites: Ubiquinol biosynthesis SubPathway 1.0 Octaprenyl-diphosphate synthase C9H14N3O8P Cytidine monophosphate 323.05185 1.0 SubPathwayInteraction1726 SubPathway1726Reaction SubPathwayReaction 647 PubChem-compound 372-97-4 CAS HMDB00095 HMDB 2.0 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4-diphosphocytidyl-2C-methyl-D-erythritol synthase Water 4-diphosphocytidyl-2-C-methylerythritol kinase SMILES NC1=NC(=O)N(C=C1)[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O Geranyltranstransferase octaprenyl diphosphate synthase undecaprenyl diphosphate synthase SMILES [O-]P([O-])(=O)OP([O-])([O-])=O 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase 14000-31-8 CAS GERANYL-PP BioCyc SMILES [H][C@@]1(O)COP([O-])(=O)OP([O-])(=O)O[C@@]1(C)CO 5675 ChemSpider SMILES [H][C@@](O)(COP(O)(=O)OP([O-])(=O)OC[C@@]1([H])O[C@@]([H])(N2C=CC(=N)N=C2[O-])[C@]([H])(O)[C@]1([H])O)[C@@](C)(O)CO SMILES [H][C@@](O)(COP(O)(=O)OP([O-])(=O)OC[C@@]1([H])O[C@@]([H])(N2C=CC(=N)N=C2[O-])[C@]([H])(O)[C@]1([H])O)[C@](C)(CO)OP([O-])([O-])=O SMILES NC1=NC=NC2=C1N=CN2[C@@H]1O[C@H](COP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O SMILES NC1=NC(=O)N(C=C1)[C@@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]1O 1.0 SMILES CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\COP(O)(=O)OP(O)(O)=O HMDB00538 HMDB P77488 UniProt 1-deoxy-D-xylulose-5-phosphate synthase 5901 ChemSpider C15H28O7P2 Farnesyl pyrophosphate 382.131 CHEBI:15422 ChEBI 1.0 5.0 SMILES [H]\C(COP([O-])(=O)OP([O-])([O-])=O)=C(\C)CO C00055 KEGG Compound 1.0 7732-18-5 CAS HMDB01285 HMDB P60472 UniProt 591-59-3 CAS SMILES CC(=O)[C@@H](O)[C@H](O)COP(O)(O)=O 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1.0 C00063 KEGG Compound 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1.0 CPD-4211 BioCyc C10H16N5O13P3 Adenosine triphosphate 506.99576 CHEBI:16526 ChEBI HMDB00082 HMDB 1-deoxy-D-xylulose 5-phosphate reductoisomerase FARNESYL-PP BioCyc CHEBI:16761 ChEBI 65-47-4 CAS 5280651 PubChem-compound 1.0 Octaprenyl-diphosphate synthase HMDB01967 HMDB 391473 ChemSpider 962 PubChem-compound C5H9O8P2 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate 258.97726 358-71-4 CAS 5800 ChemSpider CO2 Carbon dioxide 43.98983 1.0 di-trans,octa-cis-undecaprenyl diphosphate HMDB02111 HMDB SMILES CC(C)=CCC\C(C)=C\CC\C(C)=C\COP(O)(=O)OP(O)(O)=O ReactionCatalysis3668 ACTIVATION CMP BioCyc C00080 KEGG Compound ReactionCatalysis3669 ACTIVATION ReactionCatalysis3666 ACTIVATION ReactionCatalysis3667 ACTIVATION 729 PubChem-compound ReactionCatalysis3664 ACTIVATION ReactionCatalysis3665 ACTIVATION CHEBI:17677 ChEBI CHEBI:15377 ChEBI CHEBI:15378 ChEBI SMILES [H+] 6176 PubChem-compound http://identifiers.org/smpdb/SMP00997 SMPDB 58-64-0 CAS SMILES NC1=NC=NC2=C1N=CN2[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O 5886 PubChem-compound 2-C-methyl-D-erythritol 4-phosphate Q46822 UniProt Geranyltranstransferase CHEBI:16584 ChEBI 1-deoxy-D-xylulose-5-phosphate synthase 1.0 190079-18-6 CAS 280 PubChem-compound ReactionCatalysis3671 ACTIVATION ReactionCatalysis3672 ACTIVATION ReactionCatalysis3670 ACTIVATION ReactionCatalysis3675 ACTIVATION ReactionCatalysis3676 ACTIVATION ReactionCatalysis3673 ACTIVATION 1.0 ReactionCatalysis3674 ACTIVATION P62617 UniProt 1.0 P62615 UniProt 644102 PubChem-compound 1195 PubChem-compound 5941 ChemSpider CHEBI:17407 ChEBI Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) SMILES CC(=C)CCO[P@](O)(=O)OP(O)(O)=O C5H13O7P 2-C-methyl-D-erythritol 4-phosphate 216.03989 HMDB01120 HMDB SMILES OC(COP(O)(O)=O)C=O 22833512 PubChem-compound H2O Water 18.010565 SMILES CC(C)=CCC\C(C)=C\CO[P@@](=O)(O)OP(=O)(O)O 1.0 1.0 1.0 GAP BioCyc HMDB00961 HMDB 2.0 P62623 UniProt C00661 KEGG Compound Carbon dioxide P62620 UniProt C55H92O7P2 di-trans,octa-cis-undecaprenyl diphosphate 926.63184 peptidoglycan biosynthesis I SubPathway 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 627 ChemSpider SMILES CC(C)=CCO[P@](O)(=O)OP(O)(O)=O 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase C11437 KEGG Compound PW000906 PathWhiz 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2.0 OCTAPRENYL-DIPHOSPHATE BioCyc