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Pathway Description
Trans-cinnamate degradation
Klebsiella electrica
Metabolic Pathway
Trans-cinnamate, also known as trans-cinnamic acid, is an organic compound derived from cinnamic acid. Trans-cinnamate can enter the environment through industrial processes such as the manufacture of fragrances, flavorings, and pharmaceuticals. It is also a byproduct of the degradation of certain herbicides and pesticides. Bacteria such as Klebsiella electrica are capable of degrading this compound, thus detoxifying trans-cinnamate while also gaining essential carbon and energy sources for growth and metabolism. Trans-cinnamate degradation involves a sequence of enzymatic reactions converting trans-cinnamate to acetyl-CoA, a central metabolic intermediate. The compound enters the bacterial cell via facilitated diffusion upon which its degradation begins with hydroxylation by trans-cinnamate dioxygenase, followed by dehydrogenation and ring cleavage by specific dehydrogenases and dioxygenases. The intermediates are further processed to fumaric acid, pyruvic acid, and finally acetyl-CoA which enter glycolysis and citrate cycle, respectively.
References
Trans-cinnamate degradation References
Wishart, D.S., Guo, A., Oler, E., Wang, F., Anjum, A., Peters, H., Dizon, R., Sayeeda, Z., Tian, S., Lee, B.L. and Berjanskii, M., 2022. HMDB 5.0: the human metabolome database for 2022. Nucleic acids research, 50(D1), pp.D622-D631.
Kanehisa, M., 2002, November. The KEGG database. In ‘In silico’simulation of biological processes: Novartis Foundation Symposium 247 (Vol. 247, pp. 91-103). Chichester, UK: John Wiley & Sons, Ltd.
UniProt Consortium, 2019. UniProt: a worldwide hub of protein knowledge. Nucleic acids research, 47(D1), pp.D506-D515.
Kim, S., Thiessen, P.A., Bolton, E.E., Chen, J., Fu, G., Gindulyte, A., Han, L., He, J., He, S., Shoemaker, B.A. and Wang, J., 2016. PubChem substance and compound databases. Nucleic acids research, 44(D1), pp.D1202-D1213.
de Matos, P., Adams, N., Hastings, J., Moreno, P. and Steinbeck, C., 2012. A database for chemical proteomics: ChEBI. Chemical Proteomics: Methods and Protocols, pp.273-296.
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