Loading Pathway...
Error: Pathway image not found.
Hide
Pathway Description
Operon: Cytidyl Pyrophosphate Biosynthesis of Isoprenoids
Escherichia coli
Signaling Pathway
The ispDF operon in E. coli contains two genes that encode proteins that are used to form building blocks for isoprenoid compounds. There is currently no information on the regulation of this operon.
The first gene in the operon, ispD, also known as ygbP, encodes the protein 2-C-methyl-D-erythritol 4-phosphate (MEP) cytidylyltransferase. This protein catalyzes the reaction of MEP, a hydrogen ion and cytidine triphosphate, which form a pyrophosphate molecule and 4-CDP-2-C-methyl-D-erythritol.
The second gene, ispF, also known as ygbB or mecS, encodes for the protein 2-C-D-erythritol 2,4-cyclodiphosphate synthase. This protein is involved in the formation of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), which are building blocks in the biosynthesis of isoprenoids, also known as terpenoids.
References
Operon: Cytidyl Pyrophosphate Biosynthesis of Isoprenoids References
Rohdich F, Wungsintaweekul J, Fellermeier M, Sagner S, Herz S, Kis K, Eisenreich W, Bacher A, Zenk MH: Cytidine 5'-triphosphate-dependent biosynthesis of isoprenoids: YgbP protein of Escherichia coli catalyzes the formation of 4-diphosphocytidyl-2-C-methylerythritol. Proc Natl Acad Sci U S A. 1999 Oct 12;96(21):11758-63.
Pubmed: 10518523
Englund E, Shabestary K, Hudson EP, Lindberg P: Systematic overexpression study to find target enzymes enhancing production of terpenes in Synechocystis PCC 6803, using isoprene as a model compound. Metab Eng. 2018 Sep;49:164-177. doi: 10.1016/j.ymben.2018.07.004. Epub 2018 Jul 17.
Pubmed: 30025762
Highlighted elements will appear in red.
Highlight Compounds
Highlight Proteins
Enter relative concentration values (without units). Elements will be highlighted in a color gradient where red = lowest concentration and green = highest concentration. For the best results, view the pathway in Black and White.
Visualize Compound Data
Visualize Protein Data
Settings