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Pathway Description
Glycine Metabolism
Saccharomyces cerevisiae
Metabolic Pathway
The biosynthesis of glycine begins with 3-phospho-D-glycerate being metabolize into 3-phosphohydroxypyruvate through a 3-phosphoglycerate dehydrogenase. The resulting compound 3-phosphohydroxypyruvate is transaminated into 3-phospho-L-serine through a phosphoserine transaminase. This is followed by 3-phospho-L-serine being dephosphorylated through a phosphoserine phosphatase resulting in the release of a phosphate and Serine which can then be used to synthesize glycine through a serine hydroxymethyltransferase.
Serine can also be incorporated into the mitochondrion and then serine can then be used to synthesize glycine through a mitochondrial serine hydroxymethyltransferase. Glycine is then used to synthesize formic acid by first being metabolized into 5,10 methylene THF, which is transformed into a 5,10 methenyltetrahydrofolate , followed by an N10 formyl tetrahydrofolate and lastly formic acid, all through a mitochondrial C1-tetrahydrofolate synthase.
Glycine can also be synthesized from threonine through a threonine aldolase resulting in the release of acetaldehyde and glycine.
Glycine can also be synthesized from glyoxylate interacting with alanine through a glyoxylate aminotransferase resulting in the release of glycine and pyruvic acid.
References
Glycine Metabolism References
Schlosser T, Gatgens C, Weber U, Stahmann KP: Alanine : glyoxylate aminotransferase of Saccharomyces cerevisiae-encoding gene AGX1 and metabolic significance. Yeast. 2004 Jan 15;21(1):63-73. doi: 10.1002/yea.1058.
Pubmed: 14745783
Kastanos EK, Woldman YY, Appling DR: Role of mitochondrial and cytoplasmic serine hydroxymethyltransferase isozymes in de novo purine synthesis in Saccharomyces cerevisiae. Biochemistry. 1997 Dec 2;36(48):14956-64. doi: 10.1021/bi971610n.
Pubmed: 9398220
Jones EW and Fink GRĀ Regulation of amino acid and nucleotide biosynthesis in yeast. in The Molecular Biology of the Yeast Saccharomyces: Metabolism and Gene Expression, edited by Strathern JN, Jones EW and Broach JR. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press (1982) p.181-299
Liu JQ, Nagata S, Dairi T, Misono H, Shimizu S, Yamada H: The GLY1 gene of Saccharomyces cerevisiae encodes a low-specific L-threonine aldolase that catalyzes cleavage of L-allo-threonine and L-threonine to glycine--expression of the gene in Escherichia coli and purification and characterization of the enzyme. Eur J Biochem. 1997 Apr 15;245(2):289-93.
Pubmed: 9151955
Monschau N, Stahmann KP, Sahm H, McNeil JB, Bognar AL: Identification of Saccharomyces cerevisiae GLY1 as a threonine aldolase: a key enzyme in glycine biosynthesis. FEMS Microbiol Lett. 1997 May 1;150(1):55-60.
Pubmed: 9163906
Shannon KW, Rabinowitz JC: Isolation and characterization of the Saccharomyces cerevisiae MIS1 gene encoding mitochondrial C1-tetrahydrofolate synthase. J Biol Chem. 1988 Jun 5;263(16):7717-25.
Pubmed: 2836393
Albers E, Laize V, Blomberg A, Hohmann S, Gustafsson L: Ser3p (Yer081wp) and Ser33p (Yil074cp) are phosphoglycerate dehydrogenases in Saccharomyces cerevisiae. J Biol Chem. 2003 Mar 21;278(12):10264-72. doi: 10.1074/jbc.M211692200. Epub 2003 Jan 13.
Pubmed: 12525494
Sinclair DA, Dawes IW: Genetics of the synthesis of serine from glycine and the utilization of glycine as sole nitrogen source by Saccharomyces cerevisiae. Genetics. 1995 Aug;140(4):1213-22.
Pubmed: 7498764
Kory N, Wyant GA, Prakash G, Uit de Bos J, Bottanelli F, Pacold ME, Chan SH, Lewis CA, Wang T, Keys HR, Guo YE, Sabatini DM: SFXN1 is a mitochondrial serine transporter required for one-carbon metabolism. Science. 2018 Nov 16;362(6416). pii: 362/6416/eaat9528. doi: 10.1126/science.aat9528.
Pubmed: 30442778
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