PathWhiz ID | Pathway | Meta Data |
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PW123993View Pathway |
Ubiquinone BiosynthesisArabidopsis thaliana
Ubiquinone’s distinctive structure is defined by a polyisoprenoid side chain connected to a benzoquinone ring. It serves multiple roles in plants, functioning as an electron transporter in inner mitochondrial membranes, as well as acting as an antioxidant to protect against free radicals. The biosynthesis of ubiquinone is connected to the biosynthesis of tyrosine, tryptophan, and phenylalanine through the shared compounds L-tyrosine and chorismate. Its biosynthesis also takes place in many organelles, with key steps occurring in the mitochondria, chloroplasts, and peroxisomes of plant cells. The compound L-tyrosine begins in the cytoplasm and is converted to homogentisic acid before it can enter the chloroplast through the transporter homogentisate prenyltransferase. Once in the chloroplast, homogentisic acid can follow one of three different sets of reactions, ultimately forming five different compounds, plastoquinol-9, α-tocopherol, β-tocopherol, α-tocotrienol and β-tocotrienol. Pyrophosphate compounds from reactions early in all three sets are provided as products from terpenoid backbone biosynthesis. Meanwhile, chorismate, which also begins in the cytoplasm, can follow two distinct pathways. The first involves its transfer into the mitochondrion, where it undergoes a series of reactions until it forms ubiquinone. This ubiquinone can be used for oxidative phosphorylation within the mitochondrion. The second pathway chorismate follows brings it into the chloroplast, where multiple PHYLLO enzymes catalyze a series of reactions to form 2-succinyl benzoate. With the addition of coenzyme A, 2-succinyl benzoyl-CoA can be moved out of the chloroplast and into the peroxisome. Through a pair of reactions, this compound is ultimately hydrolyzed to form 1,4-dihydroxy-2-naphthoate, which is transported back into the chloroplast to form phylloquinol. Phylloquinone can also react with a hydrogen ion to form phylloquinol in the cell membrane.
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Creator: Alyssah Created On: July 17, 2020 at 10:56 Last Updated: July 17, 2020 at 10:56 |
PW088462View Pathway |
Ubiquinone BiosynthesisCaenorhabditis elegans
Ubiquinone is also known as coenzyme Q10. It is a 1,4-benzoquinone, where Q refers to the quinone chemical group, and 10 refers to the isoprenyl chemical subunits. Ubiquinone is a carrier of hydrogen atoms (protons plus electrons) and functions as an ubiquitous coenzyme in redox reactions, where it is first reduced to the enzyme-bound intermediate radical semiquinone and in a second reduction to ubiquinol (Dihydroquinone; CoQH2). Ubiquinone is not tightly bound or covalently linked to any known protein complex but is very mobile. In eukaryotes ubiquinones were found in the inner mito-chondrial membrane and in other membranes such as the endoplasmic reticulum, Golgi vesicles, lysosomes and peroxisomes. The benzoquinone portion of Coenzyme Q10 is synthesized from tyrosine, whereas the isoprene sidechain is synthesized from acetyl-CoA through the mevalonate pathway. The mevalonate pathway is also used for the first steps of cholesterol biosynthesis. The enzyme para-hydroxybenzoate polyprenyltransferase catalyzes the condensation of p-hydroxybenzoate with polyprenyl diphosphate to generate ubiquinone.
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Creator: Ana Marcu Created On: August 10, 2018 at 17:08 Last Updated: August 10, 2018 at 17:08 |
PW088234View Pathway |
Ubiquinone BiosynthesisBos taurus
Ubiquinone is also known as coenzyme Q10. It is a 1,4-benzoquinone, where Q refers to the quinone chemical group, and 10 refers to the isoprenyl chemical subunits. Ubiquinone is a carrier of hydrogen atoms (protons plus electrons) and functions as an ubiquitous coenzyme in redox reactions, where it is first reduced to the enzyme-bound intermediate radical semiquinone and in a second reduction to ubiquinol (Dihydroquinone; CoQH2). Ubiquinone is not tightly bound or covalently linked to any known protein complex but is very mobile. In eukaryotes ubiquinones were found in the inner mito-chondrial membrane and in other membranes such as the endoplasmic reticulum, Golgi vesicles, lysosomes and peroxisomes. The benzoquinone portion of Coenzyme Q10 is synthesized from tyrosine, whereas the isoprene sidechain is synthesized from acetyl-CoA through the mevalonate pathway. The mevalonate pathway is also used for the first steps of cholesterol biosynthesis. The enzyme para-hydroxybenzoate polyprenyltransferase catalyzes the condensation of p-hydroxybenzoate with polyprenyl diphosphate to generate ubiquinone.
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Creator: Ana Marcu Created On: August 10, 2018 at 11:30 Last Updated: August 10, 2018 at 11:30 |
PW088329View Pathway |
Ubiquinone BiosynthesisRattus norvegicus
Ubiquinone is also known as coenzyme Q10. It is a 1,4-benzoquinone, where Q refers to the quinone chemical group, and 10 refers to the isoprenyl chemical subunits. Ubiquinone is a carrier of hydrogen atoms (protons plus electrons) and functions as an ubiquitous coenzyme in redox reactions, where it is first reduced to the enzyme-bound intermediate radical semiquinone and in a second reduction to ubiquinol (Dihydroquinone; CoQH2). Ubiquinone is not tightly bound or covalently linked to any known protein complex but is very mobile. In eukaryotes ubiquinones were found in the inner mito-chondrial membrane and in other membranes such as the endoplasmic reticulum, Golgi vesicles, lysosomes and peroxisomes. The benzoquinone portion of Coenzyme Q10 is synthesized from tyrosine, whereas the isoprene sidechain is synthesized from acetyl-CoA through the mevalonate pathway. The mevalonate pathway is also used for the first steps of cholesterol biosynthesis. The enzyme para-hydroxybenzoate polyprenyltransferase catalyzes the condensation of p-hydroxybenzoate with polyprenyl diphosphate to generate ubiquinone.
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Creator: Ana Marcu Created On: August 10, 2018 at 13:47 Last Updated: August 10, 2018 at 13:47 |
PW088407View Pathway |
Ubiquinone BiosynthesisDrosophila melanogaster
Ubiquinone is also known as coenzyme Q10. It is a 1,4-benzoquinone, where Q refers to the quinone chemical group, and 10 refers to the isoprenyl chemical subunits. Ubiquinone is a carrier of hydrogen atoms (protons plus electrons) and functions as an ubiquitous coenzyme in redox reactions, where it is first reduced to the enzyme-bound intermediate radical semiquinone and in a second reduction to ubiquinol (Dihydroquinone; CoQH2). Ubiquinone is not tightly bound or covalently linked to any known protein complex but is very mobile. In eukaryotes ubiquinones were found in the inner mito-chondrial membrane and in other membranes such as the endoplasmic reticulum, Golgi vesicles, lysosomes and peroxisomes. The benzoquinone portion of Coenzyme Q10 is synthesized from tyrosine, whereas the isoprene sidechain is synthesized from acetyl-CoA through the mevalonate pathway. The mevalonate pathway is also used for the first steps of cholesterol biosynthesis. The enzyme para-hydroxybenzoate polyprenyltransferase catalyzes the condensation of p-hydroxybenzoate with polyprenyl diphosphate to generate ubiquinone.
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Creator: Ana Marcu Created On: August 10, 2018 at 15:49 Last Updated: August 10, 2018 at 15:49 |
PW000039View Pathway |
Ubiquinone BiosynthesisHomo sapiens
Ubiquinone is also known as coenzyme Q10. It is a 1,4-benzoquinone, where Q refers to the quinone chemical group, and 10 refers to the isoprenyl chemical subunits. Ubiquinone is a carrier of hydrogen atoms (protons plus electrons) and functions as an ubiquitous coenzyme in redox reactions, where it is first reduced to the enzyme-bound intermediate radical semiquinone and in a second reduction to ubiquinol (Dihydroquinone; CoQH2). Ubiquinone is not tightly bound or covalently linked to any known protein complex but is very mobile. In eukaryotes ubiquinones were found in the inner mito-chondrial membrane and in other membranes such as the endoplasmic reticulum, Golgi vesicles, lysosomes and peroxisomes. The benzoquinone portion of Coenzyme Q10 is synthesized from tyrosine, whereas the isoprene sidechain is synthesized from acetyl-CoA through the mevalonate pathway. The mevalonate pathway is also used for the first steps of cholesterol biosynthesis. The enzyme para-hydroxybenzoate polyprenyltransferase catalyzes the condensation of p-hydroxybenzoate with polyprenyl diphosphate to generate ubiquinone.
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Creator: WishartLab Created On: August 01, 2013 at 13:54 Last Updated: August 01, 2013 at 13:54 |
PW002473View Pathway |
Ubiquinone BiosynthesisSaccharomyces cerevisiae
Ubiquinone is also known as coenzyme Q10. It is a 1,4-benzoquinone, where Q refers to the quinone chemical group, and 10 refers to the isoprenyl chemical subunits. Ubiquinone is a carrier of hydrogen atoms (protons plus electrons) and functions as an ubiquitous coenzyme in redox reactions, where it is first reduced to the enzyme-bound intermediate radical semiquinone and in a second reduction to ubiquinol (Dihydroquinone; CoQH2). Ubiquinone is not tightly bound or covalently linked to any known protein complex but is very mobile. In eukaryotes ubiquinones were found in the inner mito-chondrial membrane and in other membranes such as the endoplasmic reticulum, Golgi vesicles, lysosomes and peroxisomes. The benzoquinone portion of Coenzyme Q10 is synthesized from tyrosine, whereas the isoprene sidechain is synthesized from acetyl-CoA through the mevalonate pathway. The mevalonate pathway is also used for the first steps of cholesterol biosynthesis. The enzyme para-hydroxybenzoate polyprenyltransferase catalyzes the condensation of p-hydroxybenzoate with polyprenyl diphosphate to generate ubiquinone.
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Creator: miguel ramirez Created On: February 19, 2016 at 11:52 Last Updated: February 19, 2016 at 11:52 |
PW064821View Pathway |
protein
Ubiquitin–Proteasome PathwayHomo sapiens
The ubiquitin-proteasome pathway is the pathway in which molecules, specifically proteins, are broken down into smaller molecules in the cytosol or in the nucleus.This pathway subsequently has effects in many other pathways and processes. This pathway uses 2 distinct steps. The first step is that the protein being broken down is tagged by multiple ubiquitin units attaching to the protein. The second step is that the protein that has been tagged degrades as it is catalyzed by the 26S proteasome. This pathway is important for DNA repair, regulating the amount of proteins, and the creation of antigen-peptide.
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Creator: xuan cao Created On: July 26, 2018 at 09:43 Last Updated: July 26, 2018 at 09:43 |
PW122192View Pathway |
protein
Ubiquitin–Proteasome PathwayBos taurus
The ubiquitin-proteasome pathway is the pathway in which molecules, specifically proteins, are broken down into smaller molecules in the cytosol or in the nucleus.This pathway subsequently has effects in many other pathways and processes. This pathway uses 2 distinct steps. The first step is that the protein being broken down is tagged by multiple ubiquitin units attaching to the protein. The second step is that the protein that has been tagged degrades as it is catalyzed by the 26S proteasome. This pathway is important for DNA repair, regulating the amount of proteins, and the creation of antigen-peptide.
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Creator: Ana Marcu Created On: September 20, 2018 at 14:55 Last Updated: September 20, 2018 at 14:55 |
PW122168View Pathway |
protein
Ubiquitin–Proteasome PathwayMus musculus
The ubiquitin-proteasome pathway is the pathway in which molecules, specifically proteins, are broken down into smaller molecules in the cytosol or in the nucleus.This pathway subsequently has effects in many other pathways and processes. This pathway uses 2 distinct steps. The first step is that the protein being broken down is tagged by multiple ubiquitin units attaching to the protein. The second step is that the protein that has been tagged degrades as it is catalyzed by the 26S proteasome. This pathway is important for DNA repair, regulating the amount of proteins, and the creation of antigen-peptide.
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Creator: Ana Marcu Created On: September 20, 2018 at 14:47 Last Updated: September 20, 2018 at 14:47 |